If using for example 'myuser' user but with a custom ssh key name i.e. myuser_github and not id_rsa you will get an error if trying to run the following command:
myuser@host:~/my-user$ git clone git@github.com:someuser/repo.git . Cloning into '.'... Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists.
Host github.com HostName github.com User git IdentityFile ~/.ssh/myuser_github
You can use a custom hostname as well, e.g.
Host github-someorg HostName github.com IdentityFile ~/.ssh/myuser_github
Then to clone use that host
git clone git@github-someorg:someuser/repo.git